Potyvirus taxonomy publications

The following publications detail the work involved in the development of CSIRO’s Potyvirus taxonomy.

Books

Shukla DD, Ward CW, Brunt AA, 1994, The Potyviridae, CAB International, Wallingford, UK, 516p.

Key publications

Xiao XW, Chu PWG, Frenkel MJ, Tabe LM, Shukla DD, Hanna PJ, Higgins TJ, Muller WJ, Ward CW, 2000, ‘Antibody-mediated improved resistance to ClYVV and PVY infections in transgenic tobacco plants expressing a single-chain variable region antibody’, Molecular Breeding, 6: 421-431.

Ward CW, Weiller G, Shukla DD, Gibbs AJ, 1995, ‘Molecular systematics of the Potyviridae, the largest plant virus family’, In: Molecular Basis of Virus Evolution, Gibbs AJ, Calisher C, Garcia-Arenal F (eds), Cambridge University Press, UK, pp.477-500.

Shukla DD, Ward CW, 1989, ‘Structure of potyvirus coat proteins and its application in the taxonomy of the potyvirus group’, Advances in Virus Research, 36: 273-314.

Jagadish MN, Hamilton RC, Fernandez CS, Schoofs P, Davern KM, Kalnins H, Ward CW, Nisbet IT, 1993, ‘High level production of hybrid potyvirus-like particles carrying repetitive copies of foreign antigens in Escherichia coli‘, Bio/Technology (now Nature Biotechnology), 11: 1166-1170.

Ward CW, 1993, ‘Progress towards a higher taxonomy of viruses’, Research in Virology, 144: 419-453.

Ward CW, Shukla DD, 1991, ‘Taxonomy of potyviruses: current problems and some solutions’, Intervirology, 32: 269-296.

Shukla DD, Jilka J, Tosic M, Ford RE, 1989, ‘A novel approach to the serology of potyviruses involving affinity-purified polyclonal antibodies directed towards virus-specific N termini of coat proteins’, Journal of General Virology, 70: 13-23.

Shukla DD, Tribbick G, Mason TJ, Hewish DR, Geysen HM, Ward CW, 1989, ‘Localization of virus-specific and group-specific epitopes of plant potyviruses by systematic immunochemical analysis of overlapping peptide fragments’, Proc. of the National Academy of Sciences, USA, 86: 8192-8196.

Shukla DD, Ward CW, 1988, ‘Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group’, Journal of General Virology, 69: 2703-2710.

Shukla DD, Strike PM, Tracy SL, Gough KH, Ward CW, 1988, ‘The N and C termini of the coat proteins of potyviruses are surface located and the N terminus contains the major virus-specific epitopes’, Journal of General Virology, 69: 1497-1508.

Reviews

Shukla DD, Ward CW, Brunt AA, Berger PH, 1998, ‘Potyviridae family’, CMI/AAB Descriptions of Plant Viruses, No.366.

Jagadish NM, Shukla DD, Grusovin J, Whittaker LA, Mcphee DA, Ward CW, 1994, ‘Assembly of plant virus coat protein into rod-shaped virus like particles in E. coli and development of a polyvalent antigen presenting system’, In: Virology in the Tropics, Rishi N, Ahuja KL, Singh BP (eds), Malhotra Publishing House, pp.63-70.

Shukla DD, Jensen SG, Toler, 1994, ‘Sorghum mosaic virus’, CMI/AAB Descriptions of Plant Viruses.

Shukla DD, Ward CW, 1994, ‘Recent developments in the identification and classification of viruses comprising the sugarcane mosaic virus subgroup of potyviruses’, In: Current Trends in Sugarcane Pathology, Rao GP, Gillaspie AG, Upadhyaya PP, Filho AB, Agnihotri VP, Chen CT (eds), International Books and Periodicals Supply Services, Delhi, India, pp.185-198.

Shukla DD, Frenkel MJ, McKern NM, Ward CW, 1994, ‘New developments in the detection and classification of potyviruses’, In: _Virology in the Tropics, Rishi N, Ahuja KL, Singh BP (eds), Malhotra Publishing House, pp.571-581.

Ward CW, Shukla DD, 1994, ‘Structure and variation of potyviruses’, In: Virology in the Tropics, Rishi N, Ahuja KL, Singh BP (eds), Malhotra Publishing House, pp.43-61.

Demski JW, Reddy VDR, Wongkaew S, Xu Z, Khun CW, Cassidy BG, Shukla DD, et al, 1993, ‘Peanut stripe virus information bulletin’, ICRISAT.

Lesemann DE, Shukla DD, Tosic M, Huth W, 1992, ‘Differentiation of the four viruses of the sugarcane mosaic virus complex based on cytopathology’, In: Potyvirus taxonomy, Barnett OW (ed), Springer-Verlag, Wien, Archives of Virology Supplement, 5: 353-361.

Mishra A, Gohel VR, Valand GB, Patel JG, Shukla DD, 1993, ‘Peanut stripe virus disease of groundnut – a review’, International Journal of Pest Management, 39: 210-215.

McKern NM, Ward CW, Shukla DD, 1992, ‘Strains of bean common mosaic virus consist of at least two distinct potyviruses’, In: Potyvirus Taxonomy, Barnett OW (ed), Springer, Wien, Archives of Virology Supplement, 5: 407-414.

Rybicki EP, Shukla DD, 1992, ‘Coat protein phylogeny and systematics of potyviruses’, In: Potyvirus taxonomy, Barnett OW (ed.), Springer-Verlag, Wien, Archives of Virology Supplement, 5: 139-170.

Shukla DD, Frenkel MJ, McKern NM, Ward CW, Jilka J, Tosic M, Ford RE, 1992, ‘Present status of the sugarcane mosaic subgroup of potyviruses’, In: Potyvirus taxonomy, Barnett OW (ed), Springer-Verlag, Wien, Archives of Virology Supplement, 5: 363-373.

Shukla DD, Lauricella R, Ward CW, 1992, ‘Serology of potyvirus: current problems and some solutions’, In: Potyvirus taxonomy, Barnett OW (ed.), Springer-Verlag, Wien, Archives of Virology Supplement, 5: 39-48.

Ward CW, McKern NM, Frenkel MJ, Shukla DD, 1992, ‘Sequence data as the major criterion for potyvirus classification’, In: Potyvirus taxonomy, Barnett OW (ed.), Springer-Verlag, Wien, Archives of Virology Supplement, 5: 283-297.

Shukla DD, Frenkel MJ, Ward CW, 1991, ‘Structure and function of potyvirus genome with special reference to the coat protein coding region’, Canadian Journal of Plant Pathology, 13: 178-191.

Shukla DD, Frenkel MJ, McKern NM, Ward CW, 1991, ‘Immunological and molecular approaches to the diagnosis of viruses infecting horticultural crops’, In: Horticulture – New Technologies and Applications, Prakesh J, Pierik RLM (eds), Kluwer Academic Publishers, The Netherlands, pp.311-319.

Shukla DD, Gough KH, Xiaowen X, Frenkel MJ, Ward CW, 1991, ‘Genetically engineered resistance in plants against viral infection’, In: Horticulture – New Technologies and Applications, Prakesh J, Pierik RLM (eds), Kluwer Academic Publishers, The Netherlands, pp.107-113.

Ford RE, Tosic M, Shukla DD, 1989, ‘Maize dwarf mosaic virus’, CMI/AAB Descriptions of Plant Viruses, No.341.

Shukla DD, Teakle DS, 1989, ‘Johnsongrass mosaic virus’, CMI/AAB Descriptions of Plant Viruses, No.340.

Shukla DD, Ward CW, 1989, ‘Identification and classification of potyviruses on the basis of coat protein sequence data and serology’, Archives of Virology, 106: 171-200.

Teakle DS, Shukla DD, Ford RE, 1989, ‘Sugarcane mosaic virus’, Revised, CMI/AAB Descriptions of Plant Viruses, No.342.

Shukla DD, Gough KH, 1980, ‘Erysimum latent viruses’, CMI/AAB Descriptions of Plant Viruses, No.222.

Original papers

Shukla DD, Hoyne PA, Ward CW, 1995, ‘Evaluation of complete genome sequences and sequences of individual gene products for the classification of hepatitis C viruses’, Archives of Virology, 140: 1747-1761.

Haq QMR, Srivastava KM, Raizada RK, Singh BP, Jain RK, Mishra A, Shukla DD, 1994, ‘Biological, serological and coat protein properties of a strain of turnip mosaic virus causing a mosaic disease of Brassica campestris and B. juncea in India’, Journal of Phytopathology, 140: 55-64.

Mink GI, Vetten HJ, Ward CW, Berger PH, Morales FJ, Myers JM, Silbernagel MJ, Barnett OW, 1994, ‘Taxonomy and classification of legume-infecting potyviruses. A proposal from the Potyviridae Study Group of the Plant Virus Subcommittee of ICTV’, Archives of Virology, 139: 231-235.

Gough KH, Shukla DD, 1993, ‘Nucleotide sequence of Johnsongrass mosaic potyvirus genomic RNA’, Intervirology, 36: 181-192.

Hewish DR, Xiao XW, Mishra A, Gough KH, Shukla DD, 1993, ‘Characterisation and epitope analysis of monoclonal antibodies to clover yellow vein and Johnsongrass mosaic potyviruses’, Archives of Virology, 133: 127-141.

Jagadish MN, Huang D, Ward CW, 1993, ‘Site-directed mutagenesis of a potyvirus coat protein and its assembly in Escheria coli‘, Journal of General Virology, 74: 893-896.

Kittipakorn K, McKern NM, Gibbs AJ, Shukla DD, 1993, ‘Strains of peanut stripe potyvirus identified by profiling peptides of the virion proteins’, Journal of Phytopathology, 137: 257-263.

McKern NM, Strike PM, Barnett OW, Mishra A, Ward CW, Shukla DD, 1993, ‘Cowpea aphid-borne mosaic virus-Morocco and South Africal Passiflora virus are strains of the same potyvirus’, Archives of Virology, 136: 207-217.

McKern NM, Strike PM, Barnett OW, Ward CW, Shukla DD, 1993, ‘Watermelon mosaic virus-Morocco is a distinct potyvirus’, Archives of Virology, 131: 467-473.

Xiao XW, Frenkel MJ, Teakle DS, Ward CW, Shukla DD, 1993, ‘Sequence diversity in the surface-exposed amino terminal region of the coat proteins of seven strains of sugarcane mosaic virus correlates with their host range and other biological properties’, Archives of Virology, 132: 399-408.

Xiao XW, Frenkel MJ, Ward CW, Shukla DD, 1993, ‘Nucleotide sequence of the 3′-terminal region confirms that pea mosaic virus-I strain is a strain of bean yellow mosaic virus’, Archives of Virology, 136: 381-387.

Frenkel MJ, Jilka JM, Shukla DD, Ward CW, 1992, ‘Differentiation of potyviruses and their strains by hybridization with the 3′ non-coding region of the viral genome’, Journal of Virological Methods, 36: 51-62.

Gough KH, Shukla DD, 1992, ‘Major sequence variations in the N-terminal region of the capsid protein of a severe strain of passionfruit woodiness potyvirus’, Archives of Virology, 124: 389-396.

Hampton RO, Shukla DD, Jordon RL, 1992, ‘Comparative potyvirus host range, serology, and coat protein peptide profiles of white lupin mosaic virus’, Phytopathology, 82: 566-571.

Jain RK, McKern NM, Tolin SA, Hill JH, Barnett OW, Tosic M, Ford RE, Beachy RN, Yu MH, Ward CW, Shukla DD, 1992, ‘Confirmation that fourteen potyvirus isolates from soybean are strains of one virus by comparing coat protein peptide profiles’, Phytopathology, 82: 292-299.

McKern NM, Barnett OW, Whittaker LA, Mishra A, Strike PM, Xiao XW, Ward CW, Shukla DD, 1992, ‘Sequence relationships among the coat proteins of pea mosaic, white lupin mosaic and bean yellow mosaic potyviruses’, Phytopathology, 83: 355-361.

McKern NM, Edskes HK, Shukla DD, 1992, ‘Purification of hydrophilic and hydrophobic peptide fragments on a single reversed-phase high performance liquid chromatographic column’, Biomedical Chromatography, 7: 15-19.

McKern NM, Mink GI, Barnett OW, Mishra A, Whittaker LA, Silbernagel MJ, Ward CW, Shukla DD, 1992, ‘Isolates of bean common mosaic virus comprising two distinct potyviruses’, Phytopathology, 82: 923-929.

McKern N, Shukla DD, Barnett OW, Vetten HJ, Dijkstra J, Whittaker LA, Ward CW, 1992, ‘Structural properties of coat proteins suggest that azuki bean mosaic virus, blackeye cowpea mosaic virus, peanut stripe virus and three potyvirus isolates from soybean are all strains of the same potyvirus’, Intervirology, 33: 121-134.

Smith GR, Ford R, Frenkel MJ, Shukla DD, Dale JL, 1992, ‘Transient expression of the coat protein of sugarcane mosaic virus in sugarcane protoplasts and expression in Escherichia coli‘, Archives of Virology, 125: 15-23.

Tracy SL, Frenkel MJ, Gough KH, Hanna PJ, Shukla DD, 1992, ‘Bean yellow mosaic, clover yellow vein and pea mosaic are distinct potyviruses: evidence from coat protein gene sequences and molecular hybridization involving the 3′ non-coding regions’, Archives of Virology, 122: 249-261.

Frenkel MJ, Jilka JM, McKern NM, Strike PM, Clark JM Jr, Shukla DD, Ward CW, 1991, ‘Unexpected sequence diversity in the amino-terminal ends of the coat proteins of strains of sugarcane mosaic virus’, Journal of General Virology, 72: 237-242.

Jagadish MN, Ward CW, Gough KH, Tulloch PA, Whittaker LA, Shukla DA, 1991, ‘Expression of potyvirus coat protein in Escherichia colii‘, Journal of General Virology, 72: 1543-1550.

McKern NM, Edskes HK, Ward CW, Strike PM, Barnett OW, Shukla DD, 1991, ‘Coat protein of potyviruses, 7: Amino acid sequence of peanut stripe virus’, Archives of Virology, 119: 25-35.

McKern NM, Shukla DD, Toler RW, Jensen SG, Tosic M, Ford RE, Ward CW, 1991, ‘Confirmation that the sugarcane mosaic virus subgroup consists of four distinct potyviruses by using peptide profiles of coat proteins’, Phytopathology, 81: 1025-1029.

Shukla DD, McKern NM, Mink GI, Barnett OW, Dijkstra J, Ward CW, 1991, ‘Molecular parameters show that cowpea aphid-borne mosaic virus is a distinct potyvirus and that bean common virus consists of at least three distinct potyviruses’, Phytopathology, 81: 1166.

Werkmeister JA, Shukla DD, 1991, ‘Selection of polyclonal antibodies to the N terminus of bean yellow mosaic potyvirus coat protein by induction of tolerance with monoclonal antibody’, Journal of Virological Methods, 34: 71-79.

Werkmeister JA, Tebb TA, Kirkpatrick A, Shukla DD, 1991, ‘The use of peptide-mediated electrofusion to select monoclonal antibodies directed against specific and homologous regions of the potyvirus coat protein’, Journal of Immunological Methods, 143: 151-157.

McKern NM, Whittaker LA, Strike PM, Ford RE, Jensen SG, Shukla DD, 1990, ‘Coat protein properties indicate that maize dwarf mosaic virus-KS-1 is a strain of Johnsongrass mosaic virus’, Phytopathology, 80: 907-912.

Srifah P, Keese P, Shukla DD, Gibbs A, 1990, ‘The primary structure of the virion protein gene, and encoded protein of Erysimum latent tymovirus’, Journal of General Virology, 71: 3085-3088.

Tosic M, Ford RE, Shukla DD, Jilka J, 1990, ‘Differentiation of sugarcane, maize dwarf, johnsongrass and sorghum mosaic viruses based on reactions of oat and some sorghum cultivars’, Plant Disease, 74: 549-552.

Frenkel MJ, Ward CW, Shukla DD, 1989, ‘The use of 3′-noncoding nucleotide sequences in the taxonomy of potyviruses: application to watermelon mosaic virus 2 and soybean mosaic virus-N’, Journal of General Virology, 70: 2775-2783.

Shukla DD, Tosic M, Jilka J, Ford RE, Toler RW, Langham MAC, 1989, ‘Taxonomy of potyviruses infecting maize, sorghum and sugarcane in Australia and the United States as determined by reactivities of polyclonal antibodies directed towards virus-specific N-termini of coat proteins’, Phytopathology, 79: 223-229.

Shukla DD, Ford RE, Tosic M, Jilka J, Ward CW, 1989, ‘Possible members of the potyvirus group transmitted by mites and whiteflies share epitopes with aphid-transmitted definitive members of the group’, Archives of Virology, 105: 143-151.

Yu MH, Frenkel MJ, McKern NM, Shukla DD, Strike PM, Ward CW, 1989, ‘Coat protein of potyviruses. 6. Amino acid sequences suggest watermelon mosaic virus 2 and soybean mosaic virus-N are strains of the same potyvirus’, Archives of Virology, 105: 55-64.

Shukla DD, McKern NM, Gough KH, Tracy SL, Letho SG, 1988, ‘Diffentiation of potyviruses and their strains of high performance liquid chromatographic peptide profiling of coat proteins’, Journal of General Virology, 69: 493-502.

Shukla DD, McKern NM, Ward CW, 1988, ‘Coat protein of potyviruses, 5: Symptomatology, serology and coat amino acid sequences of three strains of passionfruit woodiness virus’, Archives of Virology, 102: 221-232.

Shukla DD, Thomas JE, McKern NM, Tracy SL, Ward CW, 1988, ‘Coat protein of potyviruses, 4: Comparison of biological properties, serological relationships, and coat protein amino acid sequences of four strains of potato virus Y’, Archives of Virology, 102: 207-219.

Gough KH, Azad AA, Hanna PJ, Shukla DD, 1987, ‘Nucleotide sequence of the capsid and nuclear inclusion protein genes from the Johnson grass strain of sugarcane mosaic virus RNA’, Journal of General Virology, 68: 297-304.

Hewish DR, Sward RJ, Shukla DD, Rochow WF, 1987, ‘Monoclonal antibodies to an isolate of barley yellow dwarf virus from Victoria, Australia’, Australian Plant Pathology, 16: 1-4.

Shukla DD, Gough KH, Ward CW, 1987, ‘Coat protein of potyviruses, 3: Comparison of amino acid sequences of the coat proteins of four Australian strains of sugarcane mosaic virus’, Archives of Virology, 96: 59-74.

Hewish DR, Shukla DD, Gough KH, 1986, ‘The use of biotin-conjugated antisera in immunoassays for plant viruses’, Journal of Virological Methods, 13: 79-85.

Shukla DD, Inglis AS, McKern NM, Gough KH, 1986, ‘Coat protein of potyviruses, 2: Amino acid sequence of the coat protein of potato virus Y’, Virology, 152: 118-125.

Shukla DD, Gough KH, 1984, ‘Serological relationships among four Australian strains of sugarcane mosaic virus as determined by immune electron microscopy’, Plant Disease, 68: 204-206.

Hewish DR, Shukla DD, 1983, ‘Purification of barley yellow dwarf virus by gel filtration on Sephacryl S-1000 superfine’, Journal of Virological Methods, 7: 223-228.

Shukla DD, Gough KH, 1983, ‘Tobacco streak, broad bean wilt, cucumber mosaic, and alfalfa mosaic viruses associated with ring spot of Ajuga reptans in Australia’, Plant Disease, 67: 221-224.

Shukla DD, Gough KH, 1983, ‘Characteristics of the protein A-immunosorbent electron microscope technique (PA-ISEM) for detecting plant virus particles’, Acta Phytopathologica Academiae Scientiarum Hungaricae, 18: 173-185.

Shukla DD, O’Donnell IJ, Gough KH, 1983, ‘Characteristics of the Electro-Blot Radioimmunoassay (EBRIA) in relation to the identification of plant viruses’, Acta Phytopathologica Academiae Scientiarum Hungaricae, 18: 79-84.

Gough KH, Lilley GG, Shukla DD, Woods EF, 1982, ‘Some physicochemical properties of erysimum latent virus’, Archives of Biochemistry and Biophysics, 35: 5-11.

O’Donnell IJ, Shukla DD, Gough KH, 1982, ‘Electro-blot radioimmunoassay of virus-infected plant sap – a powerful new technique for detecting plant viruses’, Journal of Virological Methods, 4: 19-26.

Gough KH, Shukla DD, 1981, ‘Coat protein of Potyviruses, I: Comparison of the four Australian strains of sugarcane mosaic virus’, Virology, 111: 455-462.

Colman PM, Tulloch PA, Shukla DD, Gough KH, 1980, ‘Particle and crystal symmetry of erysimum latent virus’, Journal of Molecular Biology, 142: 263-268.

Gough KH, Shukla DD, 1980, ‘Further studies on the use of protein A in immune electron microscopy for detecting virus particles’, Journal of General Virology, 51: 415-419.

Shukla DD, Koenig R, Gough KH, Huth W, Lesemann DE, 1980, ‘Erysimum latent virus – further characterization as a tymovirus’, Phytopathology, 70: 382-384.

Shukla DD, Teakle DS, Gough KH, 1980, ‘Periwinkle, a latent host for broad bean wilt and cucumber mosaic viruses in Queensland’, Plant Disease, 64: 802-803.

Shukla DD, Gough KH, 1979, ‘The use of protein A, from Staphylococcus aureus‘, Journal of General Virology, 45: 533-536.